edgeR functions for DEG

edgeR functions for DEG

Usage

vesalius_deg_edger(seed, seed_id, query, query_id, params, type)

Arguments

seed

count matrix for group 1

seed_id

territory used in group 1

query

count matrix for group 2

query_id

territory used in group 2

params

parameter value list (pval, log_fc, min_pct)

type

either "QLF" for quasi-likelihood F-test or "LRT" fpr likelihood ratio test