SLIC segmentation
Usage
slic_segmentation(
vesalius_assay,
dimensions,
col_resolution,
embedding,
index_selection = "bubble",
compactness = 1,
scaling = 0.3,
threshold = 0.9,
max_iter = 1000,
verbose
)Arguments
- vesalius_assay
vesalius_assay object
- dimensions
dimensions to use
- col_resolution
color resolution for segmentation
- embedding
embedding to use
- index_selection
method for selecting initial indices
- compactness
compactness factor
- scaling
scaling factor
- threshold
correlation threshold
- max_iter
int - max number of kmeans iterations
- verbose
logical - progress messages