select inital indices
Usage
select_initial_indices(
coordinates,
embeddings,
type = "bubble",
n_centers = 500,
max_iter = 500
)Arguments
- coordinates
data frame containing spatial coordinates of beads
- embeddings
matrix containing embedding values - full pixel image
- type
character - method for selecting initial indices
- n_centers
numeric number of beads to select as super pixel centers
- max_iter
numeric number of iteration before returning result if no coveregnce.