leiden segmentation — leiden_segmentation • vesalius

using leiden clustering to cluster colors

Usage

leiden_segmentation(
  vesalius_assay,
  dimensions = seq(1, 3),
  col_resolution = 0.01,
  embedding = "last",
  verbose = TRUE
)

Arguments

vesalius_assay: a vesalius_assay object
dimensions: embedding dimensions used for clustering
col_resolution: clustering resolution used for leiden
embedding: embedding type used for clustering
verbose: logical if progress message should outputed

Value

list with updated segmented embedding values and segment territories.