get cell signal from vesalius assays
Usage
get_signal(
seed_assay,
query_assay,
signal,
dimensions = seq(1:30),
use_norm = "raw",
scale = FALSE,
verbose = TRUE
)Arguments
- seed_assay
vesalius_assay object
- query_assay
vesalius_assay object
- signal
character string where the signal should be taken from
- dimensions
int vector - if signal is embeddings which embeddings should be selected
- use_norm
charcater string which counts should be use when extracting signal
- scale
logical - should signal be scaled
- verbose
logical - should progress messages be outputed.