embed in gray scale using UMAP projections
Usage
embed_umap(counts, dimensions, features = NULL, verbose)
Arguments
- counts
Seurat object containing normalised counts
- dimensions
number of PCs to use for the UMAP projections
- features
custom vector of features
- verbose
logical if progress messages should be outputed
Value
normalised UMAP projection matrix
Details
Note that while you can select any number of dimensions
the number of UMAP dimensions will always be 3.