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distance pooling beads of colour segment into seperate territories

Source: R/isolate_territories.R
distance_pooling.Rd

distance pooling beads of colour segment into seperate territories

Usage

distance_pooling(img, capture_radius, min_spatial_index)

Arguments

img

data frame contain all barcodes of a single sgement

capture_radius

numeric proportion of max distance between beads to use as distance threshold between beads

min_spatial_index

numeric minimum number of beads that should be contained in a territory.

Details

Beads that are too far away or bead cluster that are below the minimum number of spatial indices will all be pooled under the isolated label. Note that this label is used across color segments.