adjust counts after reducing the resolution of the image tensor
or after filtering stray beads
Usage
adjust_counts(coordinates, counts, throw = TRUE, verbose = TRUE)
Arguments
- coordinates
data frame containing coordinates after reducing
resolution and compressing cooridnates
- counts
count matrix
- throw
logical - throwing warning message for unshared barcodes
- verbose
logical if progress messaged should be outputed.
Value
a count matrix with adjusted count values
Details
This function will check the coordinate file to
see if any barcodes have been merged together. If so,
the counts will be adjusted by taking the average count value accross
all barcodes that have been merged together.